I figured it out:) I did not take the buddypress-member them out of the sub folder. Also just so everyone knows I have buddpress running from a sub directory and not the root with no problems so far after figuring this out. I am also using a modified theme from Woo themes with it.
Can’t i just have some code changed that would tell it to look in the directory instead of the root? I have to have a flash intro so that was the purpose in putting it in a directory.