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wp+bp+bbp = 3 register possibilities, but only one register scenario. So it has no effect on from where the users registered. All are in the same table: wp_users.
Now, what you can try, is:
– activate (if not already done) profile syncing in BP settings
– check permalinks settings and resave the page (even if you mane no change to it) – this will recalculate all site urls
– using the repair tools. Dashboar > Tools and follow the instructions