edited your post mercime to correct / complete the backticks.
Christian struggling to believe you still have an issue some 3 weeks on and that huge long list of links is a bit odd. The explanation that this is only apparent with logged in views is also odd, try and get your install to an absolute and clean bp-default with no modifications anywhere.
Removing the wp_footer() call doesn’t cause any huge layout issues for me apart from knocking out the adminbar, it will be interesting to find out what the issue is.
