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Broadly speaking? It’s an odd file that permalink.php one 
You will probably need to compare it to the markup for a file such as members/index.php or some similar main template file for your theme. permalink.php has very little markup apart from calling the get_header() and get_footer() in between that you simply have a ul construct and activity/entry.php call so it’s never likely to work well in customised themes without some work.